pam2bioindex: pam2bioindex: PAM to biodiversity index

In luismurao/bam: Species Distribution Models in the light of the BAM theory

pam2bioindex: PAM to biodiversity index

Description

pam2bioindex estimates various biodiversity indices for a certain PAM.

Usage

pam2bioindex(pam, biodiv_index = "dispersion_field", as_sparse = FALSE)

Arguments

pam	A Presence-Absence-Matrix of matrix class or sparse matrix.
biodiv_index	Possible values are alpha, omega, dispersion_field, all.
as_sparse	Return indices as sparse objects

Details

The biodiversty indices can be found in \insertCiteSoberon2015;textualbam

References

\insertRef

Soberon2015bam

Examples

set.seed(111)
pam <- matrix(rbinom(100,1,0.3),nrow = 10,ncol = 10)
bioindices <- pam2bioindex(pam=pam,biodiv_index="all")
# Return results as sparse models
bioindices <- pam2bioindex(pam=pam,biodiv_index="all",as_sparse=TRUE)

luismurao/bam documentation built on Nov. 28, 2022, 3:02 p.m.