Description Usage Arguments Value Examples
This function allows you to extract Log2 ratios for all probes in a microarray. It takes as input the raw txt files found in the lab's microarray database (at 'Labshare/HTGenomics/Microarray_database/arrays') or downloaded from GEO.
1 | FE2(fileName, cy0, strain)
|
fileName |
A string representing the input file name. No default. |
cy0 |
A number representing the dye color used for the control sample
( |
strain |
A string representing the output file name (the sample name, typically a yeast strain). No default. |
A flat file with four columns:
chr number
Probe start position (bp number)
Probe end position (bp number)
Log2 ratio
Load this file using base R function read.table('/path/to/file', header = TRUE)
.
1 2 3 4 5 6 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.