opening_act_batch_run: Batch run of 'opening_act' function
In luisvalesilva/hwglabr: Collection of R functions used in the Hochwagen Lab

Description Usage Arguments Value Examples

This function will take a CSV file containing the path to multiple wiggle data folders and argument labels and run opening_act function for each data set in the file. It allows you to run a batch of data sets autmatically.

1 2	opening_act_batch_run(inputDataFile, useReadr = TRUE, runMetaORF = TRUE, userInput = FALSE)

`inputDataFile`	String indicating path to file containing instructions. The file must be in CSV format with the following columns (column names in the file must be reproduced exactly as below): path Path to wiggle data. relevantGenotype String indicating the relevant strain mutations, to be used as the argument to `opening_act` of the same name. chipTarget String indicating the ChIP target protein, to be used as the argument to `opening_act` of the same name. sampleID The sample ID, to be used as the argument to `opening_act` of the same name. No default.
`useReadr`	Boolean indicating whether to use the much faster `read_tsv()` from Hadley Wickham's readr package instead of base R's `read.table` when reading the wiggle data. Used as the argument to `readall_tab` of the same name. Defaults to `TRUE`.
`runMetaORF`	Boolean indicating whether to run the meta ORF analysis. This analysis typically takes about 30 minutes to run, so it may be useful to exclude it. Used as the argument to `opening_act` of the same name. Defaults to `TRUE`.
`userInput`	Boolean indicating whether to ask user to check the format of the provided labels. Defaults to `FALSE`.

The output of opening_act for each of the data sets included in the batch. Check the documentation of opening_act for more detail.

## Not run: 
opening_act_batch_run(inputDataFile="~/Desktop/inputs.csv")
opening_act_batch_run(inputDataFile="~/Desktop/inputs.csv", useReadr = FALSE,
                      runMetaORF = TRUE, userInput = FALSE)

## End(Not run)