getVAF: Retrieve information abotut VAF

Description Usage Arguments Value Author(s) See Also Examples

Description

Generic function to retrieve VAF found by omicsCompAnalysis on a caClass-class object.

Usage

1
getVAF(x, part=NULL, block=NULL)

Arguments

x

caClass-class object.

part

Character indicating whether "common" or "distinctive" VAF should be displayed

block

Character indicating the block of data for which the VAF will be given. It can be specified by the position of the block ("1" or "2") or the name assigned in the caClass-class object. If it is NULL both blocks are displayed.

Value

A list containing the requested information.

Author(s)

Patricia Sebastian-Leon

See Also

omicsCompAnalysis, caClass-class

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
data("STATegRa_S3")
B1 <- createOmicsExpressionSet(Data=Block1.PCA, pData=ed.PCA,
                               pDataDescr=c("classname"))
B2 <- createOmicsExpressionSet(Data=Block2.PCA,
                               pData=ed.PCA, pDataDescr=c("classname"))
# Omics components analysis
res <- omicsCompAnalysis(Input=list(B1, B2), Names=c("expr", "mirna"),
                         method="DISCOSCA", Rcommon=2, Rspecific=c(2, 2),
                         center=TRUE, scale=TRUE, weight=TRUE)
getVAF(res)
getVAF(res, part="common")
getVAF(res, part="distinctive", block="expr")

lunacab/STATegRa documentation built on May 5, 2019, 2:42 a.m.