start.analysis: start.analysis
In lutsik/DecompPipeline: Preparation pipeline for MeDeCom

Wrapper function to start one of the deconvolution algorithms MeDeCom, RefFreeEWAS or EDec

1 2	start.analysis(meth.data = NULL, rnb.set = NULL, cg_groups, Ks, work.dir, factorviz.outputs = FALSE, method = "MeDeCom", ...)

`meth.data`	A `matrix` or `data.frame` containing methylation information. If NULL, methylation information needs to be provided through `rnb.set`
`rnb.set`	An object of type `RnBSet-class` containing methylation and sample meta information.
`cg_groups`	List of CpG indices used for the analysis. Can be computed by `prepare_CG_subsets`.
`Ks`	Vector of integers used as components in MeDeCom.
`work.dir`	Working directory for the analysis.
`factorviz.outputs`	Flag indicating, if outputs should be stored to be compatible with FactorViz for data exploration
`method`	The method to be used for deconvolution. Can be one of `MeDeCom`, `RefFreeCellMix` or `EDec`.