Files in lutsik/DecompPipeline
Preparation pipeline for MeDeCom
DESCRIPTION
DeconvolutionProtocol.md
NAMESPACE
NEWS
R/CpG_subsets.R
R/ICA.R
R/data_preparation.R
R/start_analysis.R
README.md
data/small.RnBeadSet.RData
examples/ovarian_cancer/ovarian_dataset.R
examples/whole_blood/Factorviz_dataset1.R
examples/whole_blood/filtering_data.R
examples/whole_blood/generate_rnb_set_only_intmatrix_with_correct_headers.R
examples/whole_blood/generate_rnb_set_with_intensity_matrix_with_incorrect_headers.R
examples/whole_blood/generate_rnb_set_with_samplesheet_and_idatfiles.R
examples/whole_blood/generating_blood_dataset_for_medecom.R
examples/whole_blood/genrerate_cor_medecom_and_refernce_datasets.R
examples/whole_blood/paths_Rnbeads_analysis_and_online_shiny_app.txt
examples/whole_blood/rnbeadsanalysis.R
inst/extdata/houseman.50k.markers.RDS
inst/extdata/jaffe.irrizzary.markers.600.RDS
inst/extdata/small_rnbSet.zip
inst/unitTests/neuronal_data.R
inst/unitTests/sequencing_test.R
man/filter.annotation.Rd
man/filter.annotation.biseq.Rd
man/filter.nas.Rd
man/filter.nas.biseq.Rd
man/filter.quality.Rd
man/filter.quality.covg.Rd
man/prepare_CG_subsets.Rd
man/prepare_data.Rd
man/prepare_data_BS.Rd
man/rnb.set.example.Rd
man/run.rnb.ICA.Rd
man/start.analysis.Rd
man/start.edec.analysis.Rd
man/start.refreeewas.analysis.Rd
man/start_decomp_pipeline.Rd
man/start_medecom_analysis.Rd
test/neuronal_data.R
vignettes/DecompPipeline.Rmd
vignettes/DecompPipeline.html
vignettes/DecompPipeline.md
vignettes/DeconvolutionProtocol.Rmd
vignettes/DeconvolutionProtocol.html
vignettes/DeconvolutionProtocol.pdf
vignettes/biblio.bib
vignettes/bibliography.bib
