Files in madhulika-EBI/Batchevaluation
Toolkit for batch correction
.Rbuildignore
.dockerignore
.gitignore
DESCRIPTION
Dockerfile
NAMESPACE
R/BCM_Ranking.R
R/Batch_correction_methods.R
R/ComBat_seq.R
R/Diagnostic.microarray.R
R/Diagnostic_matrix.RNAseq.R
R/HVG.R
R/M1.R
R/M2.R
R/Metadatacreation.R
R/PVCA.R
R/accessory.R
R/batch_sil.R
R/diagnostic_plot.RNAseq.R
R/diagnostic_plot.microarray.R
R/entropy.R
R/evaluation_RNAseq.R
R/evaluation_microarray.R
R/gfs_function.R
R/helper_ComBat_seq.R
R/pcRegression.R
R/raw.evaluation.R
R/utils-pipe.R
README.md
SelectBCM.Rproj
data/Diagnostic_plot_RNAseq_example.png
data/Diagnostic_plot_RNAseq_example.svg
data/Merge_experiment.png
data/OA_microarray_selectBCM_analysis.Rmd
data/Ranking_plot.png
data/Ranking_plot.svg
data/control.genes.rda
data/detect_batcheffect.png
data/experiment_RNAseq/.DS_Store
data/experiment_RNAseq/E-MTAB-5060.Rdata
data/experiment_RNAseq/E-MTAB-8549.Rdata
man/ComBat_seq.Rd
man/PVCA.Rd
man/batch_correction.Rd
man/batch_evaluation.RNAseq.Rd
man/batch_evaluation.microarray.Rd
man/batch_sil.Rd
man/bcm_ranking.Rd
man/detect_effect.Rd
man/diagnostic_matrix.RNAseq.Rd
man/diagnostic_matrix.microarray.Rd
man/diagnostic_plot.RNAseq.Rd
man/diagnostic_plot.microarray.Rd
man/download_experiments_from_ExpressionAtlas.Rd
man/load_experiments.Rd
man/merge_experiment.RNAseq.Rd
man/merge_experiments.ExpressionSet.Rd
man/pcRegression.Rd
man/pipe.Rd
man/remove_isolated_experiments.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/KernSmooth
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/MASS
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/Matrix
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/base
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/boot
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/class
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/cluster
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/codetools
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/compiler
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/datasets
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/foreign
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/grDevices
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/graphics
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/grid
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/lattice
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/methods
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/mgcv
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/nlme
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/nnet
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/parallel
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/rpart
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/spatial
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/splines
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/stats
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/stats4
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/survival
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/tcltk
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/tools
renv/sandbox/R-4.2/x86_64-apple-darwin17.0/84ba8b13/utils
renv/settings.dcf
vignette/vignette.md
vignette/vignette.pdf
