diagnostic_plot.RNAseq: plotting of ranks obatined form diagnostic_matrix.RNAseq step
In madhulika-EBI/Batchevaluation: Toolkit for batch correction
View source: R/diagnostic_plot.RNAseq.R
diagnostic_plot.RNAseq R Documentation
plotting of ranks obatined form diagnostic_matrix.RNAseq step
Description
The function performs plotting of the evaluation data obtained at
the previous step 'diagnostic_matrix.RNAseq’.
Usage
diagnostic_plot.RNAseq(diagnostic_matirx)
Arguments
diagnostic_matirx
diagnostic_matirx obtained from the previous step 'diagnostic_matrix.RNAseq'.
Value
A list of two plots-
(a) Output is 'diagnostic_plot', where the x-axis is the evaluation methods and the y-axis is the Rank of each normalization method.
(b) Additional plot to summarise rankings for each method as a violin plot including summary statistics for each BCM.
Examples
diagnostic_plot.RNAseq(diagnostic_matirx)
madhulika-EBI/Batchevaluation documentation built on Jan. 27, 2023, 5:27 p.m.
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View source: R/diagnostic_plot.RNAseq.R
| diagnostic_plot.RNAseq | R Documentation |
plotting of ranks obatined form diagnostic_matrix.RNAseq step
Description
The function performs plotting of the evaluation data obtained at the previous step 'diagnostic_matrix.RNAseq’.
Usage
diagnostic_plot.RNAseq(diagnostic_matirx)
Arguments
diagnostic_matirx |
diagnostic_matirx obtained from the previous step 'diagnostic_matrix.RNAseq'. |
Value
A list of two plots- (a) Output is 'diagnostic_plot', where the x-axis is the evaluation methods and the y-axis is the Rank of each normalization method. (b) Additional plot to summarise rankings for each method as a violin plot including summary statistics for each BCM.
Examples
diagnostic_plot.RNAseq(diagnostic_matirx)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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