download_experiments_from_ExpressionAtlas: download_experiments_from_ExpressionAtlas

In madhulika-EBI/Batchevaluation: Toolkit for batch correction

download_experiments_from_ExpressionAtlas

Description

To use data from Expression Atlas that can be downloaded in '.Rdata' format.

Usage

download_experiments_from_ExpressionAtlas(
  ...,
  destdir = getwd() %>% paste("experiments", sep = "/")
)

Arguments

experiments

Character list of Expression atlas experiment id

Details

The experiment should be either bulk-RNAseq(SummarizedExperiment) or microarray(ExpressionSet). WARNING: Different types of experiment should not be processed together. For example, one SummarizedExperiment with expressionSet experiment, otherwise it will cause an error in further steps.

Value

A list of the downloaded experiments.

Examples

experiments <- download_experiments_from_ExpressionAtlas('E-ERAD-169','E-GEOD-73175','E-MTAB-2801')

madhulika-EBI/Batchevaluation documentation built on Jan. 27, 2023, 5:27 p.m.