diagnostic_matrix.RNAseq: Ranking of batch-correction methods for bulk RNAseq...

In madhulika-EBI/Batchevaluation: Toolkit for batch correction

Ranking of batch-correction methods for bulk RNAseq experiments

Description

The function performs ranking of the evaluation data obtained at the previous step 'batch_evaluation’ for the bulk RNAseq experiments. Here, methods are ranked on their individual performance, and finally 'sumRank' is the final Rank of each method for the given dataset. Rank 1 will be the best performer method.

Usage

diagnostic_matrix.RNAseq(evaluation)

Arguments

evaluation

evaluation is the evaluation list obtained from the previous step 'evaluation_matrix'.

Value

A list of two data-frame- (a) raw - simple data-frame output of evaluation matrix and, (b) ranked- Ranked data-frame of evaluation matrix which has additional column 'sumRank' containing final Rank of each method. Ranks are in descending performance order, i.e. method having score 1 will be the best method.

Examples

 diagnostic.RNAseq(assessment)

madhulika-EBI/Batchevaluation documentation built on Jan. 27, 2023, 5:27 p.m.