Man pages for madhulika-EBI/Batchevaluation
Toolkit for batch correction
| batch_correction | Correction of batch effect in merged dataset |
| batch_evaluation.microarray | Assessment of batch-correction methods |
| batch_evaluation.RNAseq | Assessment of batch-correction methods for bulk RNAseq... |
| batch_sil | batch_sil |
| bcm_ranking | Rank plot of batch-correction methods provided by SelectBCM... |
| ComBat_seq | Adjust for batch effects using an empirical Bayes framework... |
| detect_effect | Detecting batch-effect in raw merged dataset |
| diagnostic_matrix.microarray | Diagnostic plot and ranking of batch-correction methods |
| diagnostic_matrix.RNAseq | Ranking of batch-correction methods for bulk RNAseq... |
| diagnostic_plot.microarray | plotting of ranks obatined form diagnostic_matrix.microarray... |
| diagnostic_plot.RNAseq | plotting of ranks obatined form diagnostic_matrix.RNAseq step |
| download_experiments_from_ExpressionAtlas | download_experiments_from_ExpressionAtlas |
| load_experiments | Loading of experiments in a list |
| merge_experiment.RNAseq | Rough merger of RNAseq experiments |
| merge_experiments.ExpressionSet | Rough merger of microarray experiments |
| pcRegression | pcRegression |
| pipe | Pipe operator |
| PVCA | A function for principal variance component analysis |
| remove_isolated_experiments | Removal of isolated experiments |
