GetContributionOfEntitiesAtPrecisions: Calculate the contribution of complex/PW etc. (num TP) at...
In mahfuz05062/FLEX_R: FunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens
Description
Usage
Arguments
Value
Description
Calculate the contribution of complex/PW etc. (num TP) at different precision cutoffs in a tabular format. This is different from Stepwise Contribution in that it doesn't find the smallest subset to explain all the TP, but takes all of them (and therefore some TPs are counted twice i.e. those are in multiple complexes)
Usage
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GetContributionOfEntitiesAtPrecisions(
Pairs.in.data,
list.of.precisions,
summary.standard
)
Arguments
Pairs.in.data
Identity of each entity ('ID'), 'Name', Genes insdie ('Gene'), 'Length'
list.of.precisions
Precision cutoffs the user is interested in.
summary.standard
Summary of the standard used: includes ID, Name, Genes, and Length
Value
output.complex.contribution -> Complex by precision matrix (where entries are number of TP contributed by the complex at that precision)
This is a entity ID * cutoff data.frame (with an extra column added for entity Name)
mahfuz05062/FLEX_R documentation built on May 27, 2021, 4:32 a.m.
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Description Usage Arguments Value
Description
Calculate the contribution of complex/PW etc. (num TP) at different precision cutoffs in a tabular format. This is different from Stepwise Contribution in that it doesn't find the smallest subset to explain all the TP, but takes all of them (and therefore some TPs are counted twice i.e. those are in multiple complexes)
Usage
1 2 3 4 5 | GetContributionOfEntitiesAtPrecisions(
Pairs.in.data,
list.of.precisions,
summary.standard
)
|
Arguments
Pairs.in.data |
Identity of each entity ('ID'), 'Name', Genes insdie ('Gene'), 'Length' |
list.of.precisions |
Precision cutoffs the user is interested in. |
summary.standard |
Summary of the standard used: includes ID, Name, Genes, and Length |
Value
output.complex.contribution -> Complex by precision matrix (where entries are number of TP contributed by the complex at that precision) This is a entity ID * cutoff data.frame (with an extra column added for entity Name)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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