Description Usage Arguments Details Author(s) Examples
write.files saves gene-cluster sorting information obtained from
sortGenes
to disk.
1 | write.files(gs, prefix = "genesorteROuts", markers = NULL, eachCluster = FALSE)
|
gs |
The output of |
prefix |
The prefix for saving the files. |
markers |
Additionally, output files restricted to these genes. A character vector. |
eachCluster |
Also write individual files for each cluster? |
Three files will be saved to disk, including the specificity score matrix,
the posterior cluster probability given the gene and the conditional
probability of observing the gene in a cluster. If markers
is not
NULL, three additional files will be created and indicated with "_markers" in
their name. If eachCluster
is TRUE
, additional files (one per
cluster will be written which includes all genes and their scaled specificity
score for each cluster, with genes sorted by their score.
Mahmoud M Ibrahim <mmibrahim@pm.me>
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