plotMarkerScores: plotMarkerScores

Description Usage Arguments Author(s) Examples

View source: R/plotMarkerScores.R

Description

plotMarkerScores plots scatter plots of the specificity score and the gene specificity Shannon index to investigate getMarkers results.

Usage

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plotMarkerScores(
  mm,
  gs,
  markers = mm$markers,
  colors = c("#99999920", "orangered4")
)

Arguments

mm

The output of getMarkers

gs

The output of sortGenes

markers

A character vector containing the genes to highlight in the scatter plot.

colors

A color palette to use for the scatter plot.

Author(s)

Mahmoud M Ibrahim <mmibrahim@pm.me>

Examples

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mahmoudibrahim/genesorteR documentation built on April 20, 2021, 4:07 p.m.