plotMarkerScores: plotMarkerScores

In mahmoudibrahim/genesorteR: Feature Ranking in Clustered Single Cell Data

Description

plotMarkerScores plots scatter plots of the specificity score and the gene specificity Shannon index to investigate getMarkers results.

Usage

plotMarkerScores(
  mm,
  gs,
  markers = mm$markers,
  colors = c("#99999920", "orangered4")
)

Arguments

mm	The output of getMarkers
gs	The output of sortGenes
markers	A character vector containing the genes to highlight in the scatter plot.
colors	A color palette to use for the scatter plot.

Author(s)

Mahmoud M Ibrahim <[e-mail]>

Examples

data(kidneyTabulaMuris)
gs = sortGenes(kidneyTabulaMuris$exp, kidneyTabulaMuris$cellType)
mm = getMarkers(gs,quant=0.99)
plotMarkerScores(mm, gs)

mahmoudibrahim/genesorteR documentation built on April 20, 2021, 4:07 p.m.