In maialab/daeqtlr: DAEQTL Mapping

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
library(daeqtlr)

Here is how to convert your genotypes to zygosity levels:

1. Read in the genotypes with read_snp_genotypes().
2. Convert the returned data table by read_snp_genotypes() to zygosity levels with as_zygous().

# Read in the genotypes
genotypes <- read_snp_genotypes(file = daeqtlr_example('genotypes.csv'))
genotypes[1:10, 1:16]

# Convert to zygosity levels
zygosity <- as_zygous(genotypes)

zygosity[1:10, 1:16]

maialab/daeqtlr documentation built on May 18, 2022, 6:53 a.m.