plotGraph: Plot a graph object

In maize-genetics/rPHG: R front-end for the practical haplotype graph

Plot a graph object

Description

Generates a visualization of a recapitulated graph object

Usage

plotGraph(object, ...)

## S4 method for signature 'PHGDataSet'
plotGraph(
  object,
  samples = NULL,
  sampleHighlight = NULL,
  seqnames = NULL,
  start = NULL,
  end = NULL,
  colMajor = "maroon",
  colMinor = "lightgrey"
)

Arguments

object	A PHGDataSet object
...	Additional parameters to pass for ref range inclusion
samples	Samples/taxa to include in plot
sampleHighlight	Sample path to highlight
seqnames	A sequence (e.g. chromosome) ID
start	Start position for ref ranges
end	End position for ref ranges
colMajor	Highlight path color
colMinor	Muted path color

maize-genetics/rPHG documentation built on Feb. 27, 2025, 3:02 a.m.