taxaByNode: Return taxa info for haplotype IDs

In maize-genetics/rPHG: R front-end for the practical haplotype graph

Return taxa info for haplotype IDs

Description

Returns taxa (e.g. sample) information for a select set of reference ranges. Reference ranges are identified by a user defined genomic range consisting of a sequence (e.g. chromosome) ID, and start and stop positions.

Usage

taxaByNode(object, ...)

## S4 method for signature 'PHGDataSet'
taxaByNode(object, samples = NULL, seqnames, start, end)

Arguments

object	A PHGDataSet object
...	Additional arguments, for use in specific methods
samples	Samples/taxa to include in plot
seqnames	A sequence (e.g. chromosome) ID
start	Start position for ref ranges
end	End position for ref ranges

maize-genetics/rPHG documentation built on Feb. 27, 2025, 3:02 a.m.