dot-plotDiversityCurves: Plots rarefaction, recapture, and de-dup plots for specified...

Description Usage Arguments Value

Description

Plots rarefaction, recapture, and de-dup plots for specified region

Usage

1
2
.plotDiversityCurves(region, diversityDirectories, sampleNames,
  mashedNames, diversityOut, .save = TRUE)

Arguments

region

string type. One of: "cdr", "cdr_v", and "fr". "cdr" means CDR1-3, "cdr_v" means CDR3 and V only, and finally "fr" means FR1-4.

diversityDirectories

list type. List of directories to diversity dir

sampleNames

vector type. 1-1 with diversityDirectories

mashedNames

string type. Prefix for output files using "mashed-up"

diversityOut

string type. Output directory sample names

.save

logical type. Save ggplot object?

Value

Nothing


malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.