dot-plotIGVUpstreamLenDist: Plot IGV family distribution for a given...

In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Given an upstream length range, plot the distributions of IGV family without showing their actual lengths. If their actual lengths matter, refer to .plotIGVUpstreamLenDistDetailed.

Usage

.plotIGVUpstreamLenDist(upstreamDirectories, upstreamOut,
  upstreamLengthRange, lengthType, sampleNames, combinedNames, mashedNames,
  .save = TRUE)

Arguments

upstreamDirectories	list type. List of sample directories
upstreamOut	string type. Output directory
upstreamLengthRange	The range of upstream sequences to be included in this plot. This is usually determined by abseqPy and the format should be as follows: "min_max", e.g.: 1_15 means range(1, 15) inclusive.string type.
lengthType	string type. "" (the empty string) denotes everything and "_short" denotes a short sequence. abseqPy dictates this because it's used for locating the files.
sampleNames	vector type. 1-1 with upstream directories
combinedNames	string type. Title friendly "combined" sample names
mashedNames	string type. File friendly "mashed-up" sample names
.save	logical type. Save Rdata?

Value

None

malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.