dot-plotPrimerIGVStatus: Plots, for a given 'category' and 'pend', the 'primer' IGV...

Description Usage Arguments Value

Description

Plots the abundace of indelled primers relative to IGV germlines

Usage

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.plotPrimerIGVStatus(primer, pend, category, primerDirectories,
  sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)

Arguments

primer

string, primer name

pend

string, either 3 or 5 (primer end)

category

string, either "all", "productive", or "outframe"

primerDirectories

string type. Path to primer analysis directory

sampleNames

vector type. 1-1 with primerDirectories

primerOut

string type. output directory

combinedNames

string type. Title friendly "combined" sample names

mashedNames

string type. File friendly "mashed-up" sample names

.save

logical type. Save Rdata?

Value

None


malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.