dot-plotPrimerIGVStatus: Plots, for a given 'category' and 'pend', the 'primer' IGV...

In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Plots the abundace of indelled primers relative to IGV germlines

Usage

.plotPrimerIGVStatus(primer, pend, category, primerDirectories,
  sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)

Arguments

primer	string, primer name
pend	string, either 3 or 5 (primer end)
category	string, either "all", "productive", or "outframe"
primerDirectories	string type. Path to primer analysis directory
sampleNames	vector type. 1-1 with primerDirectories
primerOut	string type. output directory
combinedNames	string type. Title friendly "combined" sample names
mashedNames	string type. File friendly "mashed-up" sample names
.save	logical type. Save Rdata?

Value

None

malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.