plus-AbSeqCRep-AbSeqRep-method: Combines a AbSeqCRep object with a AbSeqRep object together...

In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Combines a AbSeqCRep object with a AbSeqRep object together for comparison

Usage

## S4 method for signature 'AbSeqCRep,AbSeqRep'
e1 + e2

Arguments

e1	AbSeqCRep.
e2	AbSeqRep.

Value

AbSeqCRep object. Calling abseqR's functions on this object will always result in a comparison.

See Also

abseqReport returns a list of AbSeqReps

Examples

# Use example data from abseqR as abseqPy's output, substitute this
# with your own abseqPy output directory
abseqPyOutput <- tempdir()
file.copy(system.file("extdata", "ex", package = "abseqR"), abseqPyOutput, recursive=TRUE)
samples <- abseqReport(file.path(abseqPyOutput, "ex"), report = 0)

# The provided example data has PCR1, PCR2, and PCR3 samples contained within
# pcr12 is an instance of AbSeqCRep
pcr12 <- samples[["PCR1"]] + samples[["PCR2"]]
# pcr3 is instance of AbSeqRep
pcr3 <- samples[["PCR3"]]

# pcr123 is an instance of AbSeqCRep
pcr123 <- pcr12 + pcr3

# you can now call the report function on this object
# report(pcr123)           # uncomment this line to execute report

malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.