Description Usage Arguments Value See Also Examples
Obtain a UCSC annotation table given the table & track name.
1 | getUCSCtable(tableName, trackName, bsession = NULL, freeze = "hg19", ...)
|
tableName |
Name of the annotation table as it appears on UCSC browser. |
trackName |
Name of the track annotation table as it appears in on UCSC browser. |
bsession |
UCSC session object returned by |
freeze |
one of following: hg19, mm8, rheM, etc. Default is hg19. |
... |
Arguments to be passed to |
a dataframe containing the annotation data.
makeUCSCsession
, getNearestFeature
,
getSitesInFeature
.
1 2 3 4 5 6 7 | ## Not run:
refflat <- getUCSCtable("refFlat", "RefSeq Genes")
## same as above ##
refflat <- getUCSCtable("refFlat", "RefSeq Genes",
bsession=session,freeze="hg19")
## End(Not run)
|
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