makeUCSCsession: Initiate UCSC genome browser session given the freeze...

Description Usage Arguments Value See Also Examples

View source: R/hiAnnotator.R

Description

Initiate UCSC genome browser session given the freeze argument.

Usage

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makeUCSCsession(freeze = "hg18")

Arguments

freeze

one of following: hg18, mm8, rheM, etc. Default is hg18.

Value

browser session object compatible with rtracklayer functions.

See Also

getUCSCtable, makeGRanges, getNearestFeature, getSitesInFeature

Examples

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## Not run: 
session <- makeUCSCsession()
genome(session)
session <- makeUCSCsession("mm8")
genome(session)

## End(Not run)

malnirav/hiAnnotator documentation built on Aug. 20, 2019, 4:10 a.m.