| binarizeMatrix | Binarize a matrix |
| blkdiag | Return a list of matrices in block diagonal form |
| BuildDensityMatrixBGS | Calculate the density matrix from an adjacency matrix |
| BuildExtendedEdgelistFromSupraAdjacencyMatrix | Builds extended edgelist from supra-adjacency matrix |
| BuildLayersTensor | Build layers tensor |
| buildMultilayerNetworkFromMuxvizFiles | Return a Multilayer Network from Muxviz files |
| BuildSupraAdjacencyMatrixFromEdgeColoredMatrices | Build supra-adjacency matrix from edge-colored matrices |
| BuildSupraAdjacencyMatrixFromExtendedEdgelist | Build supra-adjacency matrix from edge lists |
| BuildSupraTransitionMatrixFromSupraAdjacencyMatrix | Build the supra-transition matrix for a multilayer network |
| BuildTransitionMatrixFromEdgeColoredMatrices | Random walk transition matrix for an edge-coloured network.... |
| BuildTransitionMatrixFromSingleLayer | Returns a Transition Matrix from a single Layer |
| CanonicalVector | Return the ith canonical vector of a N-dimesnion basis |
| diagR | Return a matrix with elements on a diagonal specified by... |
| GetAggregateMatrix | Get aggregate matrix from nodes tensor |
| GetAggregateMatrixFromNetworkList | Get aggregate Matrix from network List |
| GetAggregateMatrixFromSupraAdjacencyMatrix | Get aggregate matrix from supra-adjacency matrix |
| GetAggregateNetworkFromNetworkList | Get aggregate Network from network List |
| GetAggregateNetworkFromSupraAdjacencyMatrix | Get aggregate network from supra-adjacency matrix |
| GetAverageGlobalClustering | Calculate Global Clustering Coefficient |
| GetAverageGlobalNodeOverlappingMatrix | Calculates the average global node overlap Matrix |
| GetAverageGlobalOverlapping | Gets the average global edge overlap on the multilayer |
| GetAverageGlobalOverlappingMatrix | Calculates the average global edge overlap Matrix |
| GetConfigurationModelTypeIFromNetworkList | Generate random multiplex networks with fixed degree... |
| GetConfigurationModelTypeIIFromNetworkList | Generate random multiplex networks with fixed degree... |
| GetConnectedComponents | Return the component assignment for each node |
| GetCoverageEvolutionEdgeColored | Get the Coverage Evolution of an edge-colored network |
| GetCoverageEvolutionMultilayer | Get the Coverage Evolution of a Multilayer Network |
| GetCoverageEvolutionSingleLayer | Get the Coverage Evolution of a single-layer network |
| GetEigenvaluesOfDensityMatrix | Calculate the eigenvalues of a density matrix |
| GetEigenvaluesOfDensityMatrixFromAdjacencyMatrix | Calculate the eigenvalues of a density matrix from an... |
| GetGiantConnectedComponent | Return the largest connected component |
| GetGiantIntersectionComponent | Return the largest connected component obtained by... |
| GetGiantIntersectionComponentFromNetworkList | Return the largest connected component obtained by... |
| GetGiantViableComponent | Return the largest viable cluster |
| GetGiantViableComponentFromNetworkList | Return the largest viable cluster from network list.... |
| GetGlobalNumberTriangles | Calculate the global number of triangles |
| GetInterAssortativityTensor | Return Assortativity Inter-layer values |
| GetJensenShannonDivergence | Calculate the Jensen-Shannon Divergence of two networks |
| GetLaplacianMatrix | Network combinatorial Laplacian |
| GetLargestEigenv | Gets the largest Eigenvalue from a Matrix. A warning is... |
| GetLocalClustering | Calculate Local Clustering Coefficient |
| GetMonoplexTriads | Return the closed triangles from a monoplex network |
| GetMultiAuthCentrality | Calculates Multi-Authority-Centrality |
| GetMultiClosenessCentrality | Returns Multi Closeness Centrality |
| GetMultiDegree | Return total multi-degree, not accounting for interlinks |
| GetMultiDegreeSum | Return the Sum of total multi-degree, include multiple times... |
| GetMultiEigenvectorCentrality | Calculates Multi-Eigenvector-Centrality |
| GetMultiHubCentrality | Calculates Multi-Hub-Centrality |
| GetMultiInDegree | Return the multi-in-degree, not accounting for interlinks |
| GetMultiInDegreeSum | Return the Sum of multi-in-degree, include multiple times the... |
| GetMultiInStrength | Return the multi-in-Strength, not accounting for interlinks |
| GetMultiInStrengthSum | Return the Sum of multi-in-Strength, include multiple times... |
| GetMultiKatzCentrality | Calculates Multi-Katz Centrality |
| GetMultiKCoreCentrality | Calculates Multi-KCore Centrality. Computes centrality in... |
| GetMultilayerCommunities_Infomap | Return multilayer communities for interconnected multilayer... |
| GetMultilayerMotifs | Return the multilayer motifs. Note that even if inter-links... |
| GetMultilayerMotifsFromNetworkList | Calculates the Motifs of a Multilayer from a network list |
| GetMultilayerReducibility | Calculate the Reducibility of a multilayer network |
| GetMultiOutDegree | Return the multi-out-degree, not accounting for interlinks |
| GetMultiOutDegreeSum | Return the Sum of multi-out-degree, include multiple times... |
| GetMultiOutStrength | Return the multi-out-Strength, not accounting for interlinks |
| GetMultiOutStrengthSum | Return the Sum of multi-out-Strength, include multiple times... |
| GetMultiPageRankCentrality | Calculates Multi-PageRank-Centrality (based on... |
| GetMultiPathStatistics | Return statistics based on multilayer paths |
| GetMultiplexCommunities_Infomap | Return multilayer communities. INFOMAP wrapper |
| GetMultiplexityCentrality | Calculates Multiplexity Centrality. |
| GetMultiplexTriads | Return the closed triangles in single layers, aggregate and... |
| GetMultiplexTriadsFromNetworkList | Return the closed triangles in single layers, aggregate and... |
| GetMultiRWCentrality | Returns Multi Random Walk Centrality |
| GetMultiStrength | Return total multi-strength |
| GetMultiStrengthSum | Return the Sum of total multi-Strength, include multiple... |
| GetNormalizedLaplacianMatrix | Network normalized Laplacian |
| GetRenyiEntropyFromAdjacencyMatrix | Calculate the quantum Renyi entropy of a network |
| GetRewiredLayerWithOverlappingEdges | Generate multiplex networks with given amount of edge... |
| GetSampleMultiplex | Get a sample of a Multiplex |
| GetSPSimilarityMatrix | Returns pairwise similarity based on Frobenius norm |
| getVersatilityProfile | Return the Versatility Profile for a given centrality |
| layoutMultiplex | layoutMultiplex |
| modR | Return the remainder of x divided by y |
| multiplot | Multiplot |
| MultiShortestPathFromNode | Return the Shortest-Path from given node to other nodes, with... |
| plot_multimodules | Plot modules |
| plot_multimotif | Plot multilayer motifs Plot a motif from a motifs table... |
| plot_multiplex | Plot a multiplex |
| plot_multiplex3D | 3D plot of a multiplex |
| reshapeR | Return a matrix reshaped according to dimension n and m |
| ShortestPathFromNode | Return the Shortest-Path from the given node to other nodes |
| SolveEigenvalueProblem | Return the matrix of eigenvectors (Q) and the diagonal matrix... |
| speye | Return the identity matrix in sparse format |
| sumR | Return the sum across rows (n=1) or columns (n=2) of a matrix |
| SupraAdjacencyToBlockTensor | Return block tensor from supra-adjacency matrix |
| SupraAdjacencyToNetworkList | Return a list of igraph objects corresponding to layers |
| SupraAdjacencyToNodesTensor | Return nodes tensor from supra-adjacency matrix |
| traceR | Return the trace of input matrix |
