modify.metagene: Select and rename metagene object sample or group names

Description Usage Arguments Value Examples

View source: R/metagene.R

Description

Select and/or rename sample and/or group names

Usage

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## S3 method for class 'metagene'
modify(
  m,
  select_samples = NULL,
  remove_samples = NULL,
  select_groups = NULL,
  remove_groups = NULL,
  rename_samples = NULL,
  rename_groups = NULL,
  verbose = FALSE
)

Arguments

m

a metagene object

select_samples

regex or list of regex(es) for samples to select

remove_samples

regex or list of regex(es) for samples to remove

select_groups

regex or list of regex(es) for groups to remove

remove_groups

regex or list of regex(es) for groups to remove

rename_samples

a regexes and substitute string, default is substitute is empty

rename_groups

a regexes and substitute string, default is substitute is empty

verbose

report changes to stdout

Value

a tibble with columns, rel_pos, value, sample, group, and name, where name is the id column of the metagene object regions, usually col4 of the bed file used to create the object.

Examples

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 fname <- system.file("extdata", "matrix_grouped.gz", package = "RMetaTools")
 m <- load_deeptoolsmatrix3_new(fname)

manschmi/RMetaTools documentation built on Dec. 14, 2021, 4:33 a.m.