modify.metagene: Select and rename metagene object sample or group names

In manschmi/RMetaTools: Tools For Metagene Analysis

Description

Select and/or rename sample and/or group names

Usage

## S3 method for class 'metagene'
modify(
  m,
  select_samples = NULL,
  remove_samples = NULL,
  select_groups = NULL,
  remove_groups = NULL,
  rename_samples = NULL,
  rename_groups = NULL,
  verbose = FALSE
)

Arguments

m	a metagene object
select_samples	regex or list of regex(es) for samples to select
remove_samples	regex or list of regex(es) for samples to remove
select_groups	regex or list of regex(es) for groups to remove
remove_groups	regex or list of regex(es) for groups to remove
rename_samples	a regexes and substitute string, default is substitute is empty
rename_groups	a regexes and substitute string, default is substitute is empty
verbose	report changes to stdout

Value

a tibble with columns, rel_pos, value, sample, group, and name, where name is the id column of the metagene object regions, usually col4 of the bed file used to create the object.

Examples

 fname <- system.file("extdata", "matrix_grouped.gz", package = "RMetaTools")
 m <- load_deeptoolsmatrix3_new(fname)

manschmi/RMetaTools documentation built on Dec. 14, 2021, 4:33 a.m.