sort_matrix: Sort metagene object regions
In manschmi/RMetaTools: Tools For Metagene Analysis
Description
Usage
Arguments
Details
Value
Examples
Description
Sort metagene object regions as sum per line
Usage
1
sort_matrix(m, bed_file)
Arguments
m
metagene object
Details
Sorts the matrix and regions.
Value
The sorted metagene object
Examples
1
2
3
4
5
6
matrix_name <- '/Users/schmidm/Documents/other_people_to_and_from/ClaudiaI/Effie_RNAseq_bws/RNAseq_deeptools_out/eRNA_tsspm5000_sorted_by_INT_binding_joined_sensitivity.gz'
bed_name <- '/Users/schmidm/Documents/other_people_to_and_from/ClaudiaI/Shiekkatar_INT_ChIP/eRNAs_sorted_by_INTS_binding.bed'
m_sorted <- sort_matrix(matrix_name, bed_name)
write.table(m_sorted, file='/Users/schmidm/Documents/other_people_to_and_from/ClaudiaI/Effie_RNAseq_bws/RNAseq_deeptools_out/eRNA_tsspm5000_sorted_by_INT_binding_joined_sensitivity_sorted', row.names = FALSE, col.names = FALSE, quote = F, dec = '.')
manschmi/RMetaTools documentation built on Dec. 14, 2021, 4:33 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Examples
Description
Sort metagene object regions as sum per line
Usage
1 | sort_matrix(m, bed_file)
|
Arguments
m |
metagene object |
Details
Sorts the matrix and regions.
Value
The sorted metagene object
Examples
1 2 3 4 5 6 | matrix_name <- '/Users/schmidm/Documents/other_people_to_and_from/ClaudiaI/Effie_RNAseq_bws/RNAseq_deeptools_out/eRNA_tsspm5000_sorted_by_INT_binding_joined_sensitivity.gz'
bed_name <- '/Users/schmidm/Documents/other_people_to_and_from/ClaudiaI/Shiekkatar_INT_ChIP/eRNAs_sorted_by_INTS_binding.bed'
m_sorted <- sort_matrix(matrix_name, bed_name)
write.table(m_sorted, file='/Users/schmidm/Documents/other_people_to_and_from/ClaudiaI/Effie_RNAseq_bws/RNAseq_deeptools_out/eRNA_tsspm5000_sorted_by_INT_binding_joined_sensitivity_sorted', row.names = FALSE, col.names = FALSE, quote = F, dec = '.')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.