Man pages for mar-esther23/boolnet-perturb
Perturb Boolean Networks
| aggregateByLabel | Label a list of int attractors and agregate by label |
| attractorListToDataframe | Convert a list of attractors to a data frame. |
| attractorToDataframe | Convert a BoolNet attractor to dataframe. |
| bin2intState | Convert binart state vector to integer. ' |
| booleanToODE | Translate from Boolean Network to Continuous ODE Network. |
| cellFateMap | Get cell fate map of a network. |
| countChangesDataframe | Count won or lost values in comparison with those present in... |
| dataframeToAttractor | Convert a data frame with nodes displayed in Boolean format... |
| derrida | Derrida analysis. |
| epigeneticLandscape | Calculate the epigenetic landscape of a network |
| getInteractionSign | Determine the sign of the interaction between two elements of... |
| getNetTopology | Returns the topology with signs of a network |
| int2binState | Convert integer to binary state vector with node names. ' |
| isGeneInput | Determine if a node is an input of the network. |
| labelAttractors | Label attractor. |
| labelList | Label state list from dataframe column |
| labelState | Label a state. |
| perturbNetworkFixedNodes | Perturb network functions knock-out (0) or over-expression... |
| perturbState | Perturb network state or trajectory. |
| populationSimulation | Analyze and graph the average of multiple asynchronous... |
| summarizeAttractors | Summarize attractors of a dataframe ignoring certain nodes. |
| validateState | Validate and convert a number to a valid state. |
| verifySyncronousVsAsyncronous | Compare atractors with synchronous and asynchronous updating. |
