cellFateMap: Get cell fate map of a network.

In mar-esther23/boolnet-perturb: Perturb Boolean Networks

Description

Runs all perturbations of time N for all states and all genes, returns a dataframe with initial states, final attractor, pertubed gene and value. See perturbState

Usage

cellFateMap(net, states, genes, time = 1, label.rules, ...)

Arguments

net	BoolNet network to perturb
genes	genes to perturb, default is all genes.
time	time of perturbation, default is 1. If time=NULL the perturbation will be fixed permanently, if time=n the perturbation will last n time steps and then the rules will return to their original values.
label.rules	dataframe with labels (1st col) and rules (2nd col), if more than one rule is true all labels are appendedl the node names present in the rules must be in node.names
dataframe	of states state to perturb, default is all attractors.
values	value of perturbed genes, default is bitflip of target genes.

Value

dataframe with initial state, final attractor, pertubed gene and value. If label.rules is given it will label all states according to the rules.

See Also

perturbState

Examples

data(cellcycle)
cellFateMap(cellcycle, time=NULL)
data(cellcycle)
cellFateMap(cellcycle, time=NULL)
      

mar-esther23/boolnet-perturb documentation built on April 21, 2020, 9:11 a.m.