Description Usage Arguments Value See Also Examples
Runs all perturbations of time N for all states and all genes, returns a dataframe with initial states, final attractor, pertubed gene and value. See perturbState
1 | cellFateMap(net, states, genes, time = 1, label.rules, ...)
|
net |
BoolNet network to perturb |
genes |
genes to perturb, default is all genes. |
time |
time of perturbation, default is 1. If time=NULL the perturbation will be fixed permanently, if time=n the perturbation will last n time steps and then the rules will return to their original values. |
label.rules |
dataframe with labels (1st col) and rules (2nd col), if more than one rule is true all labels are appendedl the node names present in the rules must be in node.names |
dataframe |
of states state to perturb, default is all attractors. |
values |
value of perturbed genes, default is bitflip of target genes. |
dataframe with initial state, final attractor, pertubed gene and value. If label.rules is given it will label all states according to the rules.
1 2 3 4 5 | data(cellcycle)
cellFateMap(cellcycle, time=NULL)
data(cellcycle)
cellFateMap(cellcycle, time=NULL)
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