convertgmt: Convert .gmt files into a binary matrix.

Description Usage Arguments Value

View source: R/convertgmt.R

Description

Convert .gmt files into a binary matrix.

Usage

1

Arguments

signature

A file containing gene sets (signatures) in .gmt format. These gene sets will be used to de-sparsify the gene-level mutation scores.

cagenes

A vector of genes, for example of cancer-associated genes. This will be used to subset the gene-level mutation data to.

Value

A matrix containing gene set mutation scores.


mararie/SAMBAR documentation built on Nov. 23, 2019, 12:36 a.m.