lioness: LIONESS

In mararie/lionessR: Modeling networks for individual samples using LIONESS

Description

This function uses the LIONESS equation to estimate single-sample networks.

Usage

lioness(x, f = netFun, ...)

Arguments

x	Numeric matrix with samples in columns.
f	Network reconstruction function. Defaults to Pearson correlation.

Examples

exp <- matrix(sample(1000,1000)/1000, 100, 10)
colnames(exp) <- paste("sample", c(1:ncol(exp)), sep="_")
row.names(exp) <- paste("gene", c(1:nrow(exp)), sep="_")
lionessResults <- lioness(exp, netFun)

mararie/lionessR documentation built on April 7, 2020, 3:18 p.m.