Files in marchion/switchBox
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm
.gitignore
DESCRIPTION
NAMESPACE
R/exportedFuncs.R
R/forBackwardCompatibility.R
R/internalFuncs.R
R/miscFuncs.R
R/plotFuncs.R
R/utilFuncs.R
data/testingData.rda
data/trainingData.rda
inst/CITATION
inst/doc/switchBox.R
inst/doc/switchBox.Rnw
inst/doc/switchBox.bib
inst/doc/switchBox.pdf
man/KTSP.Classify.Rd
man/KTSP.Train.Rd
man/SWAP.Calculate.BasicTSPScores.Rd
man/SWAP.Calculate.SignedTSPScores.Rd
man/SWAP.CalculateScores.Rd
man/SWAP.CalculateSignedScore.Rd
man/SWAP.Filter.Wilcoxon.Rd
man/SWAP.GetKTSP.PredictionStats.Rd
man/SWAP.GetKTSP.Result.Rd
man/SWAP.GetKTSP.TrainTestResults.Rd
man/SWAP.KTSP.CV.Rd
man/SWAP.KTSP.Classify.Rd
man/SWAP.KTSP.LOO.Rd
man/SWAP.KTSP.Statistic.Rd
man/SWAP.KTSP.Train.Rd
man/SWAP.Kby.Measurement.Rd
man/SWAP.Kby.Ttest.Rd
man/SWAP.MakeTSPTable.Rd
man/SWAP.PlotKTSP.GenePairBoxplot.Rd
man/SWAP.PlotKTSP.GenePairClassesBoxplot.Rd
man/SWAP.PlotKTSP.GenePairScatter.Rd
man/SWAP.PlotKTSP.Genes.Rd
man/SWAP.PlotKTSP.TrainTestROC.Rd
man/SWAP.PlotKTSP.Votes.Rd
man/SWAP.Train.1TSP.Rd
man/SWAP.Train.KTSP.Rd
man/matTesting.Rd
man/matTraining.Rd
man/switchBox-package.Rd
man/testingGroup.Rd
man/trainingGroup.Rd
src/CalculateSignedScoreCore.cc
src/CalculateSignedScoreCoreTieHandler.cc
src/CalculateSignedScoreRestrictedPairsCore.cc
src/CalculateSignedScoreRestrictedPairsCoreTieHandler.cc
src/rinit.c
src/vect2compC.cc
vignettes/switchBox.Rnw
vignettes/switchBox.bib
