trainingGroup: Training set phenotypes

In marchion/switchBox: Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Description

A factor with two levels describing the phenotypes for the training data (Glas et al cohort, see the mammaPrintData package).

Usage

data(trainingData)

Format

The trainingGroup factor contains phenotypic information for the 78 samples of the training dataset.

Details

This phenotype factor corresponds to the breast cancer patients' cohort published by Glas and colleagues in BMC Genomics (2006). The information was obtained from the mammaPrintData package as described by Marchionni and colleagues in BMC Genomics (2013).

Author(s)

Bahman Afsari [e-mail], Luigi Marchionni [e-mail]

References

See switchBox for the references.

See Also

testingGroup

Examples

### Load gene expression data for the training set
data(trainingData)

### Show the class of the ``trainingGroup'' object
class(trainingGroup)

### Show group variable
table(trainingGroup)

marchion/switchBox documentation built on May 9, 2019, 4:07 p.m.