Description Usage Arguments Value Examples
Append columns related to the position of peptide in a protein: Start (start position of a peptide in a protein), End (end position of a peptide in a protein), Protlength (length of the full protein), Appearance (if a peptide appears multiple times in a protein).
1 | cov_columns(df, elementid = "Peptide")
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elementid |
Colname of column containing peptide sequences. Will be searched against the sequences extracted from the proteome file. |
data_table |
Data frame to which the coverage columns will be appended. Must contain a column of peptide sequences and a column of the parental protein of each peptide. |
Data frame with the following added columns: "Start", "End", "Sequence", "Appearance".
1 | cov_columns(test_data, seqid='ID',elementid='Peptide')
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