Files in marcpaga/pulsedSilac
Analysis of pulsed-SILAC quantitative proteomics data
DESCRIPTION
NAMESPACE
R/addMisscleavedPeptides.R
R/allclass.R
R/allgeneric.R
R/assaynames.R
R/assays.R
R/barplotCounts.R
R/barplottimecoverage.R
R/buildlinkerdf.R
R/calculateAIC.R
R/calculateIsotopeFraction.R
R/calculateIsotopeRatio.R
R/calculateOldIsotopePool.R
R/cbind.R
R/coercers.R
R/coldata.R
R/colnames.R
R/compareaic.R
R/datasets.R
R/dim.R
R/dolar.R
R/filterbymissingtimepoints.R
R/internals.R
R/length.R
R/linkerDf.R
R/merge.R
R/mergemodelslists.R
R/metadata.R
R/metaoptions.R
R/modelturnover.R
R/moststable.R
R/ncol.R
R/nrow.R
R/peptideexperiment.R
R/plotDistributionAssay.R
R/plotDistributionModel.R
R/plotIndividualModel.R
R/proteinexperiment.R
R/proteomicsexperiment.R
R/rbind.R
R/rowdata.R
R/rownames.R
R/scatterCompareAssay.R
R/scatterCompareModels.R
R/show.R
R/subset.R
R/subsetlinkermatrix.R
R/sysdata.rda
R/upsetTimeCoverage.R
R/zzz.R
README.md
data/mefPE.rda
data/recycleLightLysine.rda
data/wormsPE.rda
man/SilacPeptideExperiment-class.Rd
man/SilacPeptideExperiment-constructor.Rd
man/SilacProteinExperiment-class.Rd
man/SilacProteinExperiment-constructor.Rd
man/SilacProteinPeptideExperiment-accessors.Rd
man/SilacProteomicsExperiment-accessors.Rd
man/SilacProteomicsExperiment-class.Rd
man/SilacProteomicsExperiment-constructor.Rd
man/addMisscleavedPeptides.Rd
man/barplotCounts.Rd
man/barplotTimeCoverage.Rd
man/buildLinkerDf.Rd
man/calculateAIC.Rd
man/calculateIsotopeFraction.Rd
man/calculateIsotopeRatio.Rd
man/calculateOldIsotopePool.Rd
man/compareAIC.Rd
man/filterByMissingTimepoints.Rd
man/mefPE.Rd
man/merge.Rd
man/mergeModelsLists.Rd
man/modelTurnover.Rd
man/mostStable.Rd
man/plotDistributionAssay.Rd
man/plotDistributionModel.Rd
man/plotIndividualModel.Rd
man/recycleLightLysine.Rd
man/scatterCompareAssays.Rd
man/scatterCompareModels.Rd
man/upsetTimeCoverage.Rd
man/wormsPE.Rd
tests/testthat.R
tests/testthat/test-aic.R
tests/testthat/test-assaynames.R
tests/testthat/test-assays.R
tests/testthat/test-barplotCounts.R
tests/testthat/test-barplotCoverage.R
tests/testthat/test-buildLinkerDf.R
tests/testthat/test-calculateIsotopeFraction.R
tests/testthat/test-calculateIsotopeRatio.R
tests/testthat/test-cbind.R
tests/testthat/test-coldata.R
tests/testthat/test-dim.R
tests/testthat/test-filterbymissingtimepoints.R
tests/testthat/test-linkerdf.R
tests/testthat/test-merge.R
tests/testthat/test-mergemetaoptions.R
tests/testthat/test-mergemodelslists.R
tests/testthat/test-metaoptions.R
tests/testthat/test-modelturnover.R
tests/testthat/test-mostStable.R
tests/testthat/test-ncol.R
tests/testthat/test-nrow.R
tests/testthat/test-oldisotopepool.R
tests/testthat/test-peptideexperiment.R
tests/testthat/test-plotDistributionAssay.R
tests/testthat/test-plotDistributionModel.R
tests/testthat/test-plotIndividualModels.R
tests/testthat/test-proteinexperiment.R
tests/testthat/test-proteomicsexperiment.R
tests/testthat/test-rbind.R
tests/testthat/test-rbindlinkermatrix.R
tests/testthat/test-rowdata.R
tests/testthat/test-scatterCompareAssays.R
tests/testthat/test-scatterCompareModels.R
tests/testthat/test-subset.R
tests/testthat/test-subsetlinkermatrix.R
vignettes/bibliography.bib
vignettes/protein_experiment.png
vignettes/proteomics_experiment.png
vignettes/pulsed_silac_summary.png
vignettes/pulsedsilac.Rmd
