calculateIsotopeRatio: Ratio calculation

Description Usage Arguments Value Examples

Description

Calculates the ratio between the new isotope and the old isotope (new/old).

Usage

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calculateIsotopeRatio(x, newIsotopeAssay, oldIsotopeAssay, ...)

## S4 method for signature 'SilacProteinExperiment'
calculateIsotopeRatio(x, newIsotopeAssay, oldIsotopeAssay)

## S4 method for signature 'SilacPeptideExperiment'
calculateIsotopeRatio(x, newIsotopeAssay, oldIsotopeAssay)

## S4 method for signature 'SilacProteomicsExperiment'
calculateIsotopeRatio(x, newIsotopeAssay, oldIsotopeAssay)

Arguments

x

A SilacProteinExperiment, SilacPeptideExperiment or a SilacProteomicsExperiment object.

newIsotopeAssay

A character indicating the assay name that has the new isotope intensity data.

oldIsotopeAssay

A character indicating the assay name that has the old isotope intensity data.

...

Unused.

Value

A SilacProteinExperiment, SilacPeptideExperiment or a SilacProteomicsExperiment object with an added assay named 'ratio'.

Examples

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data('wormsPE')
calculateIsotopeRatio(x = wormsPE,
                      newIsotopeAssay = 'int_heavy',
                      oldIsotopeAssay = 'int_light')

marcpaga/pulsedSilac documentation built on March 11, 2020, 8:49 p.m.