animate_vadt: Animated Atlantis plots for vadt

In mareframe/vat: Visualizing Atlantis Tool

Description

Create animated Atlantis plots of all the tracers

Usage

animate_vadt(bgm, bmass, interval = 0.3, codes, savedir)

Arguments

bgm	An Atlantis bgm file
bmass	BoxBiomass.txt file from Atlantis out
interval	Speed of animination (unit in seconds)
codes	Vector of containing all the Atlantis functional group codes needed to create GIFs
savedir	Where should the gifs be saved?

Details

This function will create GIFs of all Atlantis tracers by default. WARNING: This can take a while and is not necessary to use vadt. It is probably much, much better to specify certain groups! This function depends on having the unix command convert installed locally. Convert is part of imagemagick and can be downloaded here: http://www.imagemagick.org/.

See Also

create_vadt, vadt

Examples

## Not run: 
bgm <- "/path/to/atlantis.bgm"
bmass <- "/path/to/outputBoxBiomass.txt"
codes <- read.csv("functionalGroup.csv", header = T, stringsAsFactors = FALSE)
savedir <- "/home/chris/"
animate_vadt(bgm = bgm, bmass = bmass, codes = codes$Code, savedir = savedir)

## End(Not run)

mareframe/vat documentation built on May 21, 2019, 11:45 a.m.