create_vadt: Create a visualizing Atlantis diagnostic tool object

In mareframe/vat: Visualizing Atlantis Tool

Description

This function creates a visualizing Atlantis diagnostic tool object which should be fed to the vadt function. This object can be quite large and this function may take a little while depending on how long you have run Atlantis for and the complexity of your model.

Usage

create_vadt(outdir, fgfile, biolprm, ncout, startyear, toutinc, diet = TRUE)

Arguments

outdir	Path to Atlantis output directory
fgfile	Functional group file
biolprm	Biology parameter file
ncout	Name of output ncdf4 file excluding nc suffix (i.e. name given after -o flag)
startyear	Year that the model starts
toutinc	Periodicity of writing output (in days)
diet	Include diagnostic diet plots? default is TRUE

See Also

vadt, animate_vadt

Examples

## Not run: 
outdir = "out/"
fgfile = "fg.csv"
biolprm = "bio.prm"
ncout = "atlantis_output"
startyear = 1948
toutinc = 30
diet = TRUE
obj <- create_vadt(outdir, fgfile, biolprm, ncout, startyear, toutinc, diet)

## End(Not run)

mareframe/vat documentation built on May 21, 2019, 11:45 a.m.