vadt: The visualizing Atlantis diagnostic tool

In mareframe/vat: Visualizing Atlantis Tool

Description

The visualizing Atlantis diagnostic tool is an interactive Shiny-based tool for model tuning and calibration. It includes various plots, both aggregated and unaggregated, that are useful for diagnostic, tuning, and visualizing output. To use vadt, the user must first run the create_vadt function which will create an object of class vadt which can be fed to the vadt function. The user may also run the animate_vadt to create the animated GIFs (this is optional)

Usage

vadt(obj, anim = NULL)

Arguments

obj	Object of class vat returned by create_vat
anim	Directory to stored animated plot created by vat_animate function (defaults to NULL)

See Also

create_vadt, animate_vadt

Examples

## Not run: 
anim <- "/path/to/animinated/gifs"
obj <- create_vadt(outdir = "/atlantis/output_dir/",
fgfile = "/atlantis/functionalgroup.csv", 
ncout = "output_atlantis")
vadt(obj, anim = NULL)

## End(Not run)

mareframe/vat documentation built on May 21, 2019, 11:45 a.m.