miRNAGenes.updated: Get microRNA-target Interactions
In margenomics/microTargets: Retrieve microRNA-target Interactions and Compute Correlations
View source: R/miRNAGenes.updated.R
miRNAGenes.updated R Documentation
Get microRNA-target Interactions
Description
Retrieve predicted and validated miRNA-target interactions using TargetScan,
miRDB and mirTarBase
Usage
miRNAGenes.updated(
DE.miRNA,
DE.target = NULL,
path = "/bicoh/MARGenomics/annotationData/miRNAIntegration/"
)
Arguments
DE.miRNA
Character string or character vector of miRNA(s)
DE.target
Character string or character vector of mRNA(s)
path
Character string with the path to where the database files are stored
Value
Returns a list with four elements: 1) list of miRNAs each conataining
a vector with all identified targets in DE.target; 2) dataframe with results from
miRDB, 3) mirTarBase and4) TargetScan
Author(s)
Julia Perera Bel <jperera@imim.es>
margenomics/microTargets documentation built on Aug. 22, 2023, 2:26 a.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/miRNAGenes.updated.R
| miRNAGenes.updated | R Documentation |
Get microRNA-target Interactions
Description
Retrieve predicted and validated miRNA-target interactions using TargetScan, miRDB and mirTarBase
Usage
miRNAGenes.updated(
DE.miRNA,
DE.target = NULL,
path = "/bicoh/MARGenomics/annotationData/miRNAIntegration/"
)
Arguments
DE.miRNA |
Character string or character vector of miRNA(s) |
DE.target |
Character string or character vector of mRNA(s) |
path |
Character string with the path to where the database files are stored |
Value
Returns a list with four elements: 1) list of miRNAs each conataining a vector with all identified targets in DE.target; 2) dataframe with results from miRDB, 3) mirTarBase and4) TargetScan
Author(s)
Julia Perera Bel <jperera@imim.es>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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