bmr_selected_grouping: Generate Ordered, Grouped Subsets of Selected Biomarkers

In mariakalimeri/forestplot: Create Custom Forestplots for NMR Metabolomics Data

Description

This function generates ordered, grouped subsets of selected biomarkers in the form of named lists.

Usage

bmr_selected_grouping(bmr_grouping_choice = c("serum_all", "edta_plasma_all",
  "example_short"))

Arguments

bmr_grouping_choice

A string. Must be one of the following 3: "serum_all", "edta_plasma_all", "example_short".

Details

The function currently generates 3 different groupings. The need for these specific groupings and orderings came from the need to generate different versions of forest plots. The categories "serum_all" and "edta_plasma_all" are expected to be the most useful as they group all the blood biomarkers for either serum (228 biomarkers) or plasma (225 biomarkers) samples. The other category "example_short" is meant as an example case.

Value

A named list of selected biomarkers in a predefined order

Author(s)

Maria Kalimeri

Examples

# Get the grouped biomarkers
biomarker_groups <- bmr_selected_grouping("edta_plasma_all")

mariakalimeri/forestplot documentation built on May 14, 2019, 2:08 p.m.