API for markdane/MEMA
Functions to preprocess and normalize MEMA data
| Global functions | |
|---|---|
| CV | Man page |
| QASpotData | Man page |
| QASpotLevelData | Man page |
| RUVArrayWithResiduals | Man page |
| RUVIII | Man page |
| addBarcodes | Man page |
| addOmeroIDs | Man page |
| addPolarCoords | Man page |
| addSpotProportions | Man page |
| boundedLog2 | Man page |
| boundedLogit | Man page |
| calc2NProportion | Man page |
| calcAdjacency | Man page |
| calcProportion | Man page |
| calcQAScore | Man page |
| calcResidual | Man page |
| calcTheta | Man page |
| cellNeighbors | Man page |
| cleanColumnNames | Man page |
| cleanCommonSignalDt | Man page |
| cleanLegacyIssues | Man page |
| combineSignals | Man page |
| compressHA | Man page |
| convertColumnNames | Man page |
| create8WellHistograms | Man page |
| create8WellPseudoImage | Man page |
| createRUVM | Man page |
| findPerimeterCell | Man page |
| formatCP96Well | Man page |
| gateCells | Man page |
| gateOnQuantile | Man page |
| gateOnlocalMinima | Man page |
| getBarcodes | Man page |
| getCPData | Man page |
| getICData | Man page |
| getLogMetadata | Man page |
| getMetadata | Man page |
| getOmeroIDs | Man page |
| getSpotLevelData | Man page |
| getSpotMetadata | Man page |
| getWellMetadata | Man page |
| kmeansCluster | Man page |
| kmeansClusterValue | Man page |
| labelOuterCells | Man page |
| localMinima | Man page |
| loessModel | Man page |
| loessNorm | Man page Man page |
| loessNormArray | Man page Man page |
| logIntensities | Man page |
| medianNorm | Man page |
| mergeSpot8WellMetadata | Man page |
| mergeSpot96WellMetadata | Man page |
| normRUVLoessResiduals | Man page |
| numericMedian | Man page |
| plotLEHmap | Man page |
| plotSCCHeatmapsQAHistograms | Man page |
| preprocessCommonSignalsLevel3 | Man page |
| preprocessLevel4 | Man page |
| processan2omero | Man page |
| readLogData | Man page |
| readMetadata | Man page |
| readSpotMetadata | Man page |
| rotateMetadata | Man page |
| se | Man page |
| signalResidualMatrix | Man page |
| spotNormIntensities | Man page |
| summarizeToSpot | Man page |
| wellAN | Man page |
| writeCellLevel | Man page |
