API for markheron/pRon
pretty Representations of oligo-nucleotides
| Global functions | |
|---|---|
| addLetter | Source code Source code |
| bgKmerContributionsToInformationContent | Source code |
| complementary_oligo_positions | Man page Source code |
| convertSparse2Complete_ff | Man page Source code |
| cut_out_fasta_multiple | Man page Source code |
| cut_out_fasta_multiple_from_one_chr | Man page Source code |
| cut_out_fasta_single | Man page Source code |
| evenfasta2num | Man page |
| fasta2num | Man page |
| fasta2sparse_boolean | Man page Source code |
| fasta2sparse_boolean_ff | Man page Source code |
| getRunningWindowCG | Man page Source code |
| get_genome_avg | Man page Source code |
| hoBgSeqLogo | Source code |
| hoContributionsToInformationContent | Source code |
| hoSeqLogo | Source code |
| informationContent | Source code |
| informationContent.bgKmerContributions | Source code |
| informationContent.kmerContributions | Source code |
| informationContent.matrix | Source code |
| kmerContributionsToInformationContent | Source code |
| letterA | Source code Source code |
| letterC | Source code Source code |
| letterG | Source code Source code |
| letterT | Source code Source code |
| letterU | Source code |
| num2freq | Man page Source code |
| num2weightedfreq | Man page Source code |
| oligo_names | Man page Source code |
| pRon-package | Man page |
| plotOligoFreqs | Man page Source code |
| plot_logos | Man page |
| pwm2ic | Man page Source code |
| pwm2ig | Man page Source code |
| read_genome_fasta | Man page Source code |
| revComp | Man page Source code |
| seqLogo | Man page Source code |
| totalContributionsToInformationContent | Source code |
