Description Usage Arguments Value
View source: R/genome_handling.R
Cuts out multiple regions from a genome (DNAStringSet).
1 | cut_out_fasta_multiple(chr, pos, strand, size, order, genome_dir)
|
chr |
vector of chromosomes (DNAString) names where the sequences should be cutout from |
pos |
vector of central position for cuting out the region |
strand |
vector of "+"/"-" to specify if the forward or the reverse complement sequence shall be used |
size |
region size before and after the positions to cut out |
order |
what oligonucleotide order will later be used (to extend the cut region for symetry) |
genome_dir |
the directory where the chromosome fasta files can be found |
DNAStringSet of cut out fragment
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