cut_out_fasta_multiple: cut_out_fasta_multiple

Description Usage Arguments Value

View source: R/genome_handling.R

Description

Cuts out multiple regions from a genome (DNAStringSet).

Usage

1
cut_out_fasta_multiple(chr, pos, strand, size, order, genome_dir)

Arguments

chr

vector of chromosomes (DNAString) names where the sequences should be cutout from

pos

vector of central position for cuting out the region

strand

vector of "+"/"-" to specify if the forward or the reverse complement sequence shall be used

size

region size before and after the positions to cut out

order

what oligonucleotide order will later be used (to extend the cut region for symetry)

genome_dir

the directory where the chromosome fasta files can be found

Value

DNAStringSet of cut out fragment


markheron/pRon documentation built on Feb. 18, 2020, 12:33 a.m.