Description Usage Arguments Value
View source: R/genome_handling.R
Cuts out multiple regions from a genome (DNAStringSet).
| 1 | cut_out_fasta_multiple(chr, pos, strand, size, order, genome_dir)
 | 
| chr | vector of chromosomes (DNAString) names where the sequences should be cutout from | 
| pos | vector of central position for cuting out the region | 
| strand | vector of "+"/"-" to specify if the forward or the reverse complement sequence shall be used | 
| size | region size before and after the positions to cut out | 
| order | what oligonucleotide order will later be used (to extend the cut region for symetry) | 
| genome_dir | the directory where the chromosome fasta files can be found | 
DNAStringSet of cut out fragment
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