cut_out_fasta_multiple_from_one_chr: cut_out_fasta_multiple_from_one_chr

Description Usage Arguments Value

View source: R/genome_handling.R

Description

Cuts out multiple regions from a single DNAString(Set) (i.e. typically a chromosome).

Usage

1
cut_out_fasta_multiple_from_one_chr(pos, strand, size, order, chr_fasta)

Arguments

pos

vector of central position for cuting out the region

strand

vector of "+"/"-" to specify if the forward or the reverse complement sequence shall be used

size

region size before and after the positions to cut out

order

what oligonucleotide order will later be used (to extend the cut region for symetry)

chr_fasta

DNAString(Set) of the chromosome from which to cut out the regions

Value

DNAStringSet of cut out fragments


markheron/pRon documentation built on Feb. 18, 2020, 12:33 a.m.