Description Usage Arguments Value
View source: R/genome_handling.R
Cuts out multiple regions from a single DNAString(Set) (i.e. typically a chromosome).
1 | cut_out_fasta_multiple_from_one_chr(pos, strand, size, order, chr_fasta)
|
pos |
vector of central position for cuting out the region |
strand |
vector of "+"/"-" to specify if the forward or the reverse complement sequence shall be used |
size |
region size before and after the positions to cut out |
order |
what oligonucleotide order will later be used (to extend the cut region for symetry) |
chr_fasta |
DNAString(Set) of the chromosome from which to cut out the regions |
DNAStringSet of cut out fragments
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