excludeFromBam: Removes reads from a bam file
In markrobinsonuzh/CrispRVariants: Tools for counting and visualising mutations in a target location
Description
Usage
Arguments
Value
Author(s)
View source: R/excludeFromBam.R
Description
Returns a GAlignments excluding reads based on either name and/or location
Usage
1
excludeFromBam(bam, exclude.ranges = GRanges(), exclude.names = NA)
Arguments
bam
a GAlignments object
exclude.ranges
Regions to exclude, as GRanges.
exclude.names
A character vector of alignments names to exclude
Value
The bam minus the excluded regions
Author(s)
Helen Lindsay
markrobinsonuzh/CrispRVariants documentation built on May 21, 2019, 12:23 p.m.
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Description Usage Arguments Value Author(s)
View source: R/excludeFromBam.R
Description
Returns a GAlignments excluding reads based on either name and/or location
Usage
1 | excludeFromBam(bam, exclude.ranges = GRanges(), exclude.names = NA)
|
Arguments
bam |
a GAlignments object |
exclude.ranges |
Regions to exclude, as |
exclude.names |
A character vector of alignments names to exclude |
Value
The bam minus the excluded regions
Author(s)
Helen Lindsay
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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