getChimeras: Get chimeric alignments
In markrobinsonuzh/CrispRVariants: Tools for counting and visualising mutations in a target location
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Return chimeric alignments from a collection of aligned sequences
Usage
1
2
3
4
getChimeras(obj, ...)
## S4 method for signature 'CrisprSet'
getChimeras(obj, ..., sample)
Arguments
obj
An object containing aligned sequences
...
additional arguments
sample
The sample name or sample index to return
Value
A GAlignment object containing the chimeric read groups
Author(s)
Helen Lindsay
Examples
1
2
data("gol_clutch1")
chimeras <- getChimeras(gol, sample = 2)
markrobinsonuzh/CrispRVariants documentation built on May 21, 2019, 12:23 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Return chimeric alignments from a collection of aligned sequences
Usage
1 2 3 4 | getChimeras(obj, ...)
## S4 method for signature 'CrisprSet'
getChimeras(obj, ..., sample)
|
Arguments
obj |
An object containing aligned sequences |
... |
additional arguments |
sample |
The sample name or sample index to return |
Value
A GAlignment object containing the chimeric read groups
Author(s)
Helen Lindsay
Examples
1 2 | data("gol_clutch1")
chimeras <- getChimeras(gol, sample = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.