findSNVs: Find frequent SNVs

Description Usage Arguments Value Author(s)

Description

Find single nucleotide variants (SNVs) above a specified frequency in a table of variants.

Usage

1
2
3
4
5
findSNVs(obj, ...)

## S4 method for signature 'CrisprSet'
findSNVs(obj, ..., freq = 0.25,
  include.chimeras = TRUE)

Arguments

obj

An object containing variant counts

...

additional arguments

freq

minimum frequency snv to return (Default: 0.25)

include.chimeras

include chimeric reads when calculating SNV frequencies (Default: TRUE)

Value

A vector of SNVs and their frequencies

Author(s)

Helen Lindsay


markrobinsonuzh/CrispRVariants documentation built on May 21, 2019, 12:23 p.m.