hcRegions: Masking files for hg19
In markrobinsonuzh/Repitools: Epigenomic tools
hcRegions R Documentation
Masking files for hg19
Description
File to mask out areas of the genome that are prone to causing false positives in ChIP-seq and other sequencing based functional assays,
as proposed by Pickrell et al. (2011), Bioinformatics 27: 2144-2146, http://eqtl.uchicago.edu/Home.html.
Usage
hcRegions
Format
A GRanges object created using the bedfile provided on http://eqtl.uchicago.edu/Masking/seq.cov1.ONHG19.bed.gz.
Source
Pickrell et al. (2011), Bioinformatics 27: 2144-2146.
markrobinsonuzh/Repitools documentation built on March 20, 2024, 6:04 a.m.
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| hcRegions | R Documentation |
Masking files for hg19
Description
File to mask out areas of the genome that are prone to causing false positives in ChIP-seq and other sequencing based functional assays, as proposed by Pickrell et al. (2011), Bioinformatics 27: 2144-2146, http://eqtl.uchicago.edu/Home.html.
Usage
hcRegionsFormat
A GRanges object created using the bedfile provided on http://eqtl.uchicago.edu/Masking/seq.cov1.ONHG19.bed.gz.
Source
Pickrell et al. (2011), Bioinformatics 27: 2144-2146.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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