findProtease: Find Proteases

In martinry/proteasy: Protease Mapping

Find Proteases

Description

Given a vector of peptides and proteins, finds known proteases acting on cleavage sites.

Usage

findProtease(protein, peptide, organism, start_pos, end_pos)

Arguments

protein	a vector of UniProt Accession IDs.
peptide	a vector of amino acid sequences corresponding to the proteins.
organism	name of organism.
start_pos	(optional) numeric vector of N-terminus positions in protein sequence.
end_pos	(optional) numeric vector of C-terminus positions in protein sequence.

Value

S4 object Cleavages

Examples

protein <- c("P02671", "P02671", "P68871", "P01011")
peptide <- c("FEEVSGNVSPGTR", "FVSETESR", "LLVVYPW", "ITLLSAL")
res <- findProtease(protein = protein,
                    peptide = peptide,
                    organism = "Homo sapiens")

martinry/proteasy documentation built on Feb. 5, 2024, 4:04 p.m.