Files in marziasettino/MMRFVariant
R package for variant analysis from MMRF-CoMMpass data source
.Rbuildignore
.gitignore
CaseStudy_6.R
DESCRIPTION
ImpactTableAll.png
MMRFVariant.Rproj
Meta/vignette.rds
NAMESPACE
R/MMRFVariant_functions.R
R/Private.R
README.Rmd
README.md
ResultsPlot/KM_Plot_NRAS_bestresp_disc.pdf
ResultsPlot/KM_Plot_NRAS_ethnicity_disc.pdf
ResultsPlot/KM_Plot_NRAS_stage_disc.pdf
ResultsPlot/KM_Plot_NRAS_treatment_disc.pdf
ResultsPlot/PlotVariantsbyGene_heatmap.pdf
ResultsPlot/PlotbyEffectImpact.pdf
data-raw/data_example.R
data/ListSNPs.all.10.rda
data/ListSNPs.rda
data/ListSNPs_NRAS.rda
data/impact.table.rda
data/impact.table.sub.rda
data/patient.example.rda
data/trt.example.rda
data/variant.ann.example.rda
doc/Analize.R
doc/Analize.Rmd
doc/Analize.html
doc/Introduction.R
doc/Introduction.Rmd
doc/Introduction.html
doc/Visualization.R
doc/Visualization.Rmd
doc/Visualization.html
doc/my-vignette.R
doc/my-vignette.Rmd
doc/my-vignette.html
man/MMRFVariant_GetVariantsbyGene.Rd
man/MMRFVariant_PlotVariantsbyGene.Rd
man/MMRFVariant_PlotbyEffectImpact.Rd
man/MMRFVariant_SurvivalKM.Rd
man/MMRFVariant_SurvivalKM_Single.Rd
man/MMRFVariant_getImpact.Rd
vignettes/.gitignore
vignettes/Analize.Rmd
vignettes/Introduction.Rmd
vignettes/Retrieval.Rmd
vignettes/Visualization.Rmd
vignettes/imgs/Functions.png
vignettes/imgs/ImpactTable.png
vignettes/imgs/ImpactTableAll.png
vignettes/imgs/ImpactTable_NRAS.png
vignettes/imgs/KM_Surv_bestresp.png
vignettes/imgs/KM_Surv_ethnicity.png
vignettes/imgs/KM_Surv_stage.png
vignettes/imgs/KM_Surv_treatment.png
vignettes/imgs/PlotEffectbyImpact.png
vignettes/imgs/PlotVariantsbyGene_heatmap.png
vignettes/imgs/PlotVariantsbyGene_heatmap_all.png
vignettes/imgs/Plot_impact_Effect_Variants.png
vignettes/imgs/PlotbyEffectImpact.png
vignettes/imgs/PlotbyEffectImpactAll.png
vignettes/imgs/PlotbyEffectImpact_NRAS.png
vignettes/imgs/Tab_GetImpacts.png
vignettes/imgs/UseCase.png
vignettes/imgs/workflow.png
